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Dialog "How Do I...?" - Biomedical: Medicine, Life Sciences, Biotechnology, Agriculture & Food

Find Federally Funded Biotech Research Projects?

TOPIC: Often companies and organizations involved in biotechnology seek details about U.S. government-sponsored research projects. They want to know sponsoring agencies, corporate researchers, starting and end dates, and project descriptions. Dialog has several databases that address government endeavors. Among them, Federal Research in Progress (FEDRIP) (File 266) provides access to details about ongoing U.S. federally funded research projects in the fields of physical sciences, engineering and life sciences. All records in the database include title, principal investigator, performing and sponsoring organization. Most records contain a description of the research.

Related databases include NTIS—National Technical Information Service (File 6), and Federal Register (File 180).

In this exercise, you want to find research projects on gene sequencing funded in the current fiscal year. You will use File 266 and run a keyword search on titles and descriptor fields, restrict results to the current fiscal year. You will then use RANK to browse the sponsoring agencies.

 

COMMAND SUMMARY

BEGIN 266
SELECT GENE(5N)SEQUENC?/TI,DE
SELECT S1 AND FY=2008
TYPE S2/8/1-5
RANK SP CONT
Follow RANK menu prompts
TYPE S2/9/1


HOW TO...



1. BEGIN File 266 to search Federal Research in Progress.

2. SELECT search terms using proximity connectors and narrow to the Title or the Descriptor (/TI,DE) fields.

The connector (N) specifies the words can be in either order. Placing a number before the N indicates how many words can appear between the connected terms.

The question mark truncation symbol allows for variant word endings.

3. SELECT Set 1 (S1) AND the current fiscal year (FY=).


?b 266      
File 266:FEDRIP 2008/Apr
       Comp & dist by NTIS, Intl Copyright All Rights Res
      Set  Items  Description
      ---  -----  -----------
?s gene(5n)sequenc?/ti,de
           21014  GENE/TI,DE
            4523  SEQUENC?/TI,DE
      S1     878  GENE(5N)SEQUENC?/TI,DE

?s s1 and fy=2008
             878  S1
           27387  FY=2008
      S2      55  S1 AND FY=2008



4. TYPE
a few records in Format 8 to browse titles and indexing. This helps you to see if you’re on the right track. The descriptor terms give insight on ways to tighten or hone the search.

Notice that the contributing government agency code appears above the title. The field to search the agency is File Segment (FS=).

Note: Some records have been omitted from this display.

To select the appropriate record number, look at the range of records in the TYPE command (e.g., 2/8/2).


?t s2/8/1-5


2/8/1
DIALOG(R)File 266: FEDRIP
Comp & dist by NTIS, Intl Copyright All Rights Res.
All rights reserved.

00655026
Identifying No.: 5R01MH066877-07   Agency Code: CRISP
Searching for ADHD Susceptibility Genes

Descriptors: attention deficit disorder; pathologic process;
gene interaction; genotype; nucleic acid sequence;
longitudinal human study; phenotype ; family genetics; human
data; gene environment interaction; clinical research;
disease /disorder etiology; genetic susceptibility; single
nucleotide polymorphism

2/8/2
DIALOG(R)File 266: FEDRIP
Comp & dist by NTIS, Intl Copyright All Rights Res.
All rights reserved.

00650098
Identifying No.: 5R21HL082670-02   Agency Code: CRISP
SHP-2 Inhibitors as Potential Therapeutic Agents for JMML
and Noonan Syndrome


Descriptors: hematopoiesis; blood /lymphatic pharmacology;
cell differentiation; chemical information system; chemical
structure function; phosphatase inhibitor; genetic disorder;
gene mutation; computer assisted sequence analysis;
myelogenous leukemia; protein structure; cell line; protein
tyrosine phosphatase; cell proliferation; protein binding;
protein interaction; drug discovery /isolation

. . . .



5.
Use RANK to get a quick snapshot of the sponsoring agencies (SP) in these 55 records. CONT provides a continuous display.

Follow the RANK menu prompts. Pressing <ENTER> brings up the highest ranked 50 sponsoring agencies in the set.

Note: If your focus is on universities, institutions and medical facilities performing the research, RANK CS CONT. The CS field is the Corporate Source.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Enter EXIT to leave RANK and confirm with Yes (Y).


?rank sp cont

Started processing RANK
Completed Ranking 55 records

Press ENTER to view the TOP 50 terms
   or enter a number N to view the top N terms
   or >N to view terms with more than N items
   or enter ALL to view all terms
Enter title for continuous output or press ENTER for 
current title option
?sponsoring agencies fedrip gene sequence
Adding title to results...
SPONSORING AGENCIES FEDRIP GENE SEQUENCE
----------------------------------------

RANK: S2/1-55   Field: SP=  File(s): 266
(Rank fields found in 55 records -- 15 unique terms)
RANK No.  Items  Term
--------  -----  ----
    1       16   NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS D
    2       14   NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES
    3        6   NATIONAL HEART, LUNG, AND BLOOD INSTITUTE
    4        3   NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE A
    5        3   NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCI
    6        2   NATIONAL CANCER INSTITUTE
    7        2   NATIONAL EYE INSTITUTE     8        2   NATIONAL INSTITUTE OF CHILD HEALTH AND HUMAN D     9        1   NATIONAL HUMAN GENOME RESEARCH INSTITUTE    10        1   NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKE    11        1   NATIONAL INSTITUTE OF DENTAL & CRANIOFACIAL RE    12        1   NATIONAL INSTITUTE OF MENTAL HEALTH    13        1   NATIONAL INSTITUTE ON AGING    14        1   NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHO    15        1   NATIONAL INSTITUTE ON DEAFNESS AND OTHER COMMU          ---end of results---
P =  next page      Pn = Jump to page n
P- = previous page  M =  More Options     Exit = Leave RANK
To view records from RANK, enter VIEW followed by RANK number,
format, and item(s) to display, e.g., VIEW 2/9/ALL.
Enter desired option(s) or enter RANK number(s) to save terms.
?exit 
RANK results will be erased; have you saved all the terms of 
interest? (YES/NO)
?y
Exiting...  (no terms were saved)

6. TYPE selected record(s) in Format 9 for the full record.

Records provide contact information of the principal investigator.

 

 

 

 

Fields available to search project dates include Starting Date (SD=) and Completion Date (CD=).

Note: Part of this record is omitted from the display.

?t s2/9/1

2/9/1 
DIALOG(R)File 266: FEDRIP
Comp & dist by NTIS, Intl Copyright All Rights Res.
All rights reserved.

00655026
Identifying No.: 5R01MH066877-07   Agency Code: CRISP
Searching for ADHD Susceptibility Genes

Principal Investigator: FARAONE, STEPHEN V, PHD
Address: FARAONES@UPSTATE.EDU SUNY UPSTATE MEDICAL UNIVERSITY
750 E ADAMS STREET SYRACUSE, NY 13210

Performing Org.: UPSTATE MEDICAL UNIVERSITY, SYRACUSE, NEW YORK
Sponsoring Org.: NATIONAL INSTITUTE OF MENTAL HEALTH
Dates: 2006/01/02 To 2003/31/11   Fy : 2008  
Type Of Award: Noncompeting Continuation (Type 5)

Summary: DESCRIPTION (provided by applicant): Attention Deficit
Hyperactivity Disorder (ADHD) is a common disorder of childhood
associated with school failure, psychiatric co-morbidity and
psychosocial disability. Family and twin studies suggest t
hat
ADHD has a substantial genetic component and, unlike other psychiatric conditions that have produced an array of conflicting results, molecular genetic research into ADHD has produced a body of work implicating several genes in the etiology of the disorder. In the first funding cycle of this grant, we have used a family- based association study to search for variants that result in increased susceptibility to ADHD for the DRD4, SLC6A3, DRD5,
SNAP25 and HTR1B genes. That work has found evidence for haplotypes of the HTR1B and SNAP25 genes as increasing susceptibility to ADHD. We have resequenced the risk haplotypes in 48 ADHD affecteds, resequencing a total of 115kb identifying a total of 350 SNPs of which 200 are novel. In this proposed renewal, we plan to confirm and extend the haplotype association results for HTR1B, SLC6A3 and SNAP25 using family-based and case-control samples. Identifying true causal variants after observing haplotypic
associations presents a challenge because the SNPs sampled in a given haplotype block are correlated and may not include the causal polymorphisms of interest.
. . . .
Descriptors: attention deficit disorder; pathologic process; gene interaction; genotype; nucleic acid sequence; longitudinal human study; phenotype ; family genetics; human data; gene environment interaction; clinical research; disease/disorder etiology; genetic susceptibility; single nucleotide polymorphism

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Stock #: 54418; Last modified: 14 Sep 2011



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